STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A507DXT2Uncharacterized protein. (532 aa)    
Predicted Functional Partners:
A0A507FJI1
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.946
A0A507FPR2
Sm domain-containing protein.
   
 0.928
A0A507FNZ3
Small nuclear ribonucleoprotein Sm D2.
   
 0.913
A0A507FM18
Uncharacterized protein.
   
 
 0.906
A0A507FLA7
Uncharacterized protein.
   
 
 0.905
A0A507FD09
WD_REPEATS_REGION domain-containing protein.
    
 
 0.904
A0A507FN02
CPSF_A domain-containing protein.
    
 0.904
A0A507FIS0
WD_REPEATS_REGION domain-containing protein.
    
 0.902
A0A507FEV0
Uncharacterized protein.
    
 
 0.901
A0A507FI38
MPN domain-containing protein.
    
 
 0.899
Your Current Organism:
Chytriomyces confervae
NCBI taxonomy Id: 246404
Other names: C. confervae, Chytridium confervae, Chytridium confervae (Wille) Minden, Chytriomyces confervae A.Batko
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