A0A507FHI9 protein (Chytriomyces confervae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A507FHI9

Usp domain-containing protein. (160 aa)

Predicted Functional Partners:

A0A507FJ60

0.997

A0A507FS32

0.810

A0A507FIB5

0.708

A0A507FED2

0.706

A0A507DJV8

0.692

A0A507EJ62

0.692

A0A507FFY1

0.666

A0A507DSJ2

0.663

A0A507DYR9

0.663

A0A507FM06

0.663

Your Current Organism:

Chytriomyces confervae

NCBI taxonomy Id: 246404
Other names: C. confervae, Chytridium confervae, Chytridium confervae (Wille) Minden, Chytriomyces confervae A.Batko

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A507DJV8	A0A507FHI9	Uncharacterized protein.	Usp domain-containing protein.	0.692
A0A507DJV8	A0A507FIB5	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.985
A0A507DJV8	A0A507FJ60	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A507DSJ2	A0A507FFY1	Importin N-terminal domain-containing protein.	Uncharacterized protein.	0.403
A0A507DSJ2	A0A507FHI9	Importin N-terminal domain-containing protein.	Usp domain-containing protein.	0.663
A0A507DSJ2	A0A507FS32	Importin N-terminal domain-containing protein.	Uncharacterized protein.	0.951
A0A507DYR9	A0A507FHI9	Uncharacterized protein.	Usp domain-containing protein.	0.663
A0A507DYR9	A0A507FS32	Uncharacterized protein.	Uncharacterized protein.	0.951
A0A507EJ62	A0A507FHI9	Uncharacterized protein.	Usp domain-containing protein.	0.692
A0A507EJ62	A0A507FIB5	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.985
A0A507EJ62	A0A507FJ60	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A507FED2	A0A507FHI9	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	Usp domain-containing protein.	0.706
A0A507FFY1	A0A507DSJ2	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.403
A0A507FFY1	A0A507FHI9	Uncharacterized protein.	Usp domain-containing protein.	0.666
A0A507FFY1	A0A507FM06	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.403
A0A507FFY1	A0A507FS32	Uncharacterized protein.	Uncharacterized protein.	0.961
A0A507FHI9	A0A507DJV8	Usp domain-containing protein.	Uncharacterized protein.	0.692
A0A507FHI9	A0A507DSJ2	Usp domain-containing protein.	Importin N-terminal domain-containing protein.	0.663
A0A507FHI9	A0A507DYR9	Usp domain-containing protein.	Uncharacterized protein.	0.663
A0A507FHI9	A0A507EJ62	Usp domain-containing protein.	Uncharacterized protein.	0.692