RO3G_00329 protein (Rhizopus delemar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RO3G_00329

Uncharacterized protein. (422 aa)

Predicted Functional Partners:

RO3G_07062

0.973

RO3G_15093

0.973

RO3G_06103

0.950

RO3G_03407

0.907

RO3G_04963

0.907

RO3G_01383

0.878

RO3G_01748

0.878

RO3G_08034

0.878

RO3G_15753

0.878

RO3G_05080

0.868

Your Current Organism:

Rhizopus delemar

NCBI taxonomy Id: 246409
Other names: R. delemar RA 99-880, Rhizopus delemar RA 99-880, Rhizopus delemar RA99-880

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RO3G_00329	RO3G_01383	I1BHE5	I1BKE9	Uncharacterized protein.	SCP2 domain-containing protein.	0.878
RO3G_00329	RO3G_01748	I1BHE5	I1BLG4	Uncharacterized protein.	SCP2 domain-containing protein.	0.878
RO3G_00329	RO3G_03407	I1BHE5	I1BR73	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.907
RO3G_00329	RO3G_04963	I1BHE5	I1BVM8	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.907
RO3G_00329	RO3G_05080	I1BHE5	I1BVZ5	Uncharacterized protein.	ETF domain-containing protein.	0.868
RO3G_00329	RO3G_06103	I1BHE5	I1BYW8	Uncharacterized protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.950
RO3G_00329	RO3G_07062	I1BHE5	I1C1M7	Uncharacterized protein.	Uncharacterized protein.	0.973
RO3G_00329	RO3G_08034	I1BHE5	I1C4E9	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.878
RO3G_00329	RO3G_15093	I1BHE5	I1CPK2	Uncharacterized protein.	Uncharacterized protein.	0.973
RO3G_00329	RO3G_15753	I1BHE5	I1CRG2	Uncharacterized protein.	SCP2 domain-containing protein.	0.878
RO3G_01383	RO3G_00329	I1BKE9	I1BHE5	SCP2 domain-containing protein.	Uncharacterized protein.	0.878
RO3G_01383	RO3G_01748	I1BKE9	I1BLG4	SCP2 domain-containing protein.	SCP2 domain-containing protein.	0.919
RO3G_01383	RO3G_03407	I1BKE9	I1BR73	SCP2 domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.901
RO3G_01383	RO3G_04963	I1BKE9	I1BVM8	SCP2 domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.901
RO3G_01383	RO3G_05080	I1BKE9	I1BVZ5	SCP2 domain-containing protein.	ETF domain-containing protein.	0.738
RO3G_01383	RO3G_06103	I1BKE9	I1BYW8	SCP2 domain-containing protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.891
RO3G_01383	RO3G_07062	I1BKE9	I1C1M7	SCP2 domain-containing protein.	Uncharacterized protein.	0.980
RO3G_01383	RO3G_08034	I1BKE9	I1C4E9	SCP2 domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.918
RO3G_01383	RO3G_15093	I1BKE9	I1CPK2	SCP2 domain-containing protein.	Uncharacterized protein.	0.980
RO3G_01383	RO3G_15753	I1BKE9	I1CRG2	SCP2 domain-containing protein.	SCP2 domain-containing protein.	0.919