RO3G_01856 protein (Rhizopus delemar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RO3G_01856

Uncharacterized protein. (271 aa)

Predicted Functional Partners:

RO3G_07964

0.985

RO3G_06686

0.984

RO3G_15636

0.984

RO3G_05552

0.983

RO3G_00392

0.958

RO3G_11216

0.958

RO3G_02435

0.949

RO3G_03490

0.913

RO3G_01144

0.879

RO3G_09316

0.870

Your Current Organism:

Rhizopus delemar

NCBI taxonomy Id: 246409
Other names: R. delemar RA 99-880, Rhizopus delemar RA 99-880, Rhizopus delemar RA99-880

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RO3G_00392	RO3G_01144	I1BHK8	I1BJR0	Pep3_Vps18 domain-containing protein.	Uncharacterized protein.	0.966
RO3G_00392	RO3G_01856	I1BHK8	I1BLS2	Pep3_Vps18 domain-containing protein.	Uncharacterized protein.	0.958
RO3G_00392	RO3G_02435	I1BHK8	I1BNF1	Pep3_Vps18 domain-containing protein.	CNH domain-containing protein.	0.991
RO3G_00392	RO3G_03490	I1BHK8	I1BRF5	Pep3_Vps18 domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.958
RO3G_00392	RO3G_05552	I1BHK8	I1BXB7	Pep3_Vps18 domain-containing protein.	Vacuolar protein sorting-associated protein 41; Required for vacuolar assembly and vacuolar traffic. Belongs to the VPS41 family.	0.990
RO3G_00392	RO3G_06686	I1BHK8	I1C0K1	Pep3_Vps18 domain-containing protein.	Uncharacterized protein.	0.990
RO3G_00392	RO3G_07964	I1BHK8	I1C479	Pep3_Vps18 domain-containing protein.	Uncharacterized protein.	0.992
RO3G_00392	RO3G_09316	I1BHK8	I1C826	Pep3_Vps18 domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.964
RO3G_00392	RO3G_15636	I1BHK8	I1CR45	Pep3_Vps18 domain-containing protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.992
RO3G_01144	RO3G_00392	I1BJR0	I1BHK8	Uncharacterized protein.	Pep3_Vps18 domain-containing protein.	0.966
RO3G_01144	RO3G_01856	I1BJR0	I1BLS2	Uncharacterized protein.	Uncharacterized protein.	0.879
RO3G_01144	RO3G_02435	I1BJR0	I1BNF1	Uncharacterized protein.	CNH domain-containing protein.	0.980
RO3G_01144	RO3G_03490	I1BJR0	I1BRF5	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.714
RO3G_01144	RO3G_05552	I1BJR0	I1BXB7	Uncharacterized protein.	Vacuolar protein sorting-associated protein 41; Required for vacuolar assembly and vacuolar traffic. Belongs to the VPS41 family.	0.980
RO3G_01144	RO3G_06686	I1BJR0	I1C0K1	Uncharacterized protein.	Uncharacterized protein.	0.980
RO3G_01144	RO3G_07964	I1BJR0	I1C479	Uncharacterized protein.	Uncharacterized protein.	0.980
RO3G_01144	RO3G_09316	I1BJR0	I1C826	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.443
RO3G_01144	RO3G_11216	I1BJR0	I1CDH5	Uncharacterized protein.	Uncharacterized protein.	0.966
RO3G_01144	RO3G_15636	I1BJR0	I1CR45	Uncharacterized protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.980
RO3G_01856	RO3G_00392	I1BLS2	I1BHK8	Uncharacterized protein.	Pep3_Vps18 domain-containing protein.	0.958