Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RO3G_03296 | RO3G_05464 | I1BQW2 | I1BX29 | 40S ribosomal protein S27. | Methyltransf_11 domain-containing protein. | 0.666 |
RO3G_03296 | RO3G_07756 | I1BQW2 | I1C3M1 | 40S ribosomal protein S27. | Bms1-type G domain-containing protein. | 0.944 |
RO3G_03296 | RO3G_08122 | I1BQW2 | I1C4Y4 | 40S ribosomal protein S27. | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.423 |
RO3G_03296 | RO3G_12091 | I1BQW2 | I1CG00 | 40S ribosomal protein S27. | Bms1-type G domain-containing protein. | 0.944 |
RO3G_03930 | RO3G_05464 | I1CTF4 | I1BX29 | Histone H3; Belongs to the histone H3 family. | Methyltransf_11 domain-containing protein. | 0.706 |
RO3G_03930 | RO3G_08122 | I1CTF4 | I1C4Y4 | Histone H3; Belongs to the histone H3 family. | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.995 |
RO3G_05464 | RO3G_03296 | I1BX29 | I1BQW2 | Methyltransf_11 domain-containing protein. | 40S ribosomal protein S27. | 0.666 |
RO3G_05464 | RO3G_03930 | I1BX29 | I1CTF4 | Methyltransf_11 domain-containing protein. | Histone H3; Belongs to the histone H3 family. | 0.706 |
RO3G_05464 | RO3G_06146 | I1BX29 | I1BZ11 | Methyltransf_11 domain-containing protein. | Uncharacterized protein. | 0.713 |
RO3G_05464 | RO3G_07249 | I1BX29 | I1CK29 | Methyltransf_11 domain-containing protein. | Histone H3; Belongs to the histone H3 family. | 0.706 |
RO3G_05464 | RO3G_07492 | I1BX29 | I1C2V7 | Methyltransf_11 domain-containing protein. | Uncharacterized protein. | 0.692 |
RO3G_05464 | RO3G_07756 | I1BX29 | I1C3M1 | Methyltransf_11 domain-containing protein. | Bms1-type G domain-containing protein. | 0.685 |
RO3G_05464 | RO3G_08122 | I1BX29 | I1C4Y4 | Methyltransf_11 domain-containing protein. | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.747 |
RO3G_05464 | RO3G_09731 | I1BX29 | I1C991 | Methyltransf_11 domain-containing protein. | Histone H3. | 0.683 |
RO3G_05464 | RO3G_12091 | I1BX29 | I1CG00 | Methyltransf_11 domain-containing protein. | Bms1-type G domain-containing protein. | 0.685 |
RO3G_05464 | RO3G_15243 | I1BX29 | I1CQ02 | Methyltransf_11 domain-containing protein. | Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family. | 0.697 |
RO3G_06146 | RO3G_05464 | I1BZ11 | I1BX29 | Uncharacterized protein. | Methyltransf_11 domain-containing protein. | 0.713 |
RO3G_06146 | RO3G_07492 | I1BZ11 | I1C2V7 | Uncharacterized protein. | Uncharacterized protein. | 0.532 |
RO3G_06146 | RO3G_15243 | I1BZ11 | I1CQ02 | Uncharacterized protein. | Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family. | 0.509 |
RO3G_07249 | RO3G_05464 | I1CK29 | I1BX29 | Histone H3; Belongs to the histone H3 family. | Methyltransf_11 domain-containing protein. | 0.706 |
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