RO3G_09419 protein (Rhizopus delemar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RO3G_09419

Uncharacterized protein. (299 aa)

Predicted Functional Partners:

RO3G_03133

0.566

RO3G_12601

0.566

RO3G_14439

0.547

RO3G_12992

0.531

RO3G_00405

0.526

RO3G_07062

0.523

RO3G_15093

0.523

RO3G_11820

0.522

RO3G_11874

0.514

RO3G_15614

0.502

Your Current Organism:

Rhizopus delemar

NCBI taxonomy Id: 246409
Other names: R. delemar RA 99-880, Rhizopus delemar RA 99-880, Rhizopus delemar RA99-880

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RO3G_00405	RO3G_03133	I1BHM1	I1BQE9	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Uncharacterized protein.	0.728
RO3G_00405	RO3G_09419	I1BHM1	I1C8C9	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Uncharacterized protein.	0.526
RO3G_00405	RO3G_11874	I1BHM1	I1CFD3	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Protein kinase domain-containing protein.	0.770
RO3G_00405	RO3G_14439	I1BHM1	I1CMP8	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.665
RO3G_03133	RO3G_00405	I1BQE9	I1BHM1	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.728
RO3G_03133	RO3G_07062	I1BQE9	I1C1M7	Uncharacterized protein.	Uncharacterized protein.	0.489
RO3G_03133	RO3G_09419	I1BQE9	I1C8C9	Uncharacterized protein.	Uncharacterized protein.	0.566
RO3G_03133	RO3G_11820	I1BQE9	I1CF79	Uncharacterized protein.	Mre11_DNA_bind domain-containing protein; Belongs to the MRE11/RAD32 family.	0.690
RO3G_03133	RO3G_11874	I1BQE9	I1CFD3	Uncharacterized protein.	Protein kinase domain-containing protein.	0.470
RO3G_03133	RO3G_12601	I1BQE9	I1CHG0	Uncharacterized protein.	GMC_OxRdtase_N domain-containing protein.	0.857
RO3G_03133	RO3G_12992	I1BQE9	I1CIK1	Uncharacterized protein.	Lysophospholipase.	0.821
RO3G_03133	RO3G_14439	I1BQE9	I1CMP8	Uncharacterized protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.567
RO3G_03133	RO3G_15093	I1BQE9	I1CPK2	Uncharacterized protein.	Uncharacterized protein.	0.489
RO3G_03133	RO3G_15614	I1BQE9	I1CR23	Uncharacterized protein.	Uncharacterized protein; Belongs to the complex I LYR family.	0.569
RO3G_07062	RO3G_03133	I1C1M7	I1BQE9	Uncharacterized protein.	Uncharacterized protein.	0.489
RO3G_07062	RO3G_09419	I1C1M7	I1C8C9	Uncharacterized protein.	Uncharacterized protein.	0.523
RO3G_07062	RO3G_12601	I1C1M7	I1CHG0	Uncharacterized protein.	GMC_OxRdtase_N domain-containing protein.	0.679
RO3G_07062	RO3G_15093	I1C1M7	I1CPK2	Uncharacterized protein.	Uncharacterized protein.	0.821
RO3G_09419	RO3G_00405	I1C8C9	I1BHM1	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.526
RO3G_09419	RO3G_03133	I1C8C9	I1BQE9	Uncharacterized protein.	Uncharacterized protein.	0.566