Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RO3G_04340 | RO3G_09652 | I1BTV5 | I1C912 | General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. | Uncharacterized protein. | 0.999 |
RO3G_04340 | RO3G_09858 | I1BTV5 | I1C9L8 | General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. | Uncharacterized protein. | 0.999 |
RO3G_04340 | RO3G_12052 | I1BTV5 | I1CFW1 | General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. | Helicase ATP-binding domain-containing protein. | 0.999 |
RO3G_04340 | RO3G_12924 | I1BTV5 | I1CID3 | General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. | BSD domain-containing protein. | 0.999 |
RO3G_04340 | RO3G_15755 | I1BTV5 | I1CRG4 | General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. | HMG box domain-containing protein. | 0.792 |
RO3G_05745 | RO3G_09652 | I1BXW0 | I1C912 | Uncharacterized protein; Belongs to the actin family. | Uncharacterized protein. | 0.442 |
RO3G_05745 | RO3G_12480 | I1BXW0 | I1CH39 | Uncharacterized protein; Belongs to the actin family. | Uncharacterized protein; Belongs to the actin family. | 0.979 |
RO3G_05745 | RO3G_15641 | I1BXW0 | I1CR50 | Uncharacterized protein; Belongs to the actin family. | Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family. | 0.999 |
RO3G_05745 | RO3G_15755 | I1BXW0 | I1CRG4 | Uncharacterized protein; Belongs to the actin family. | HMG box domain-containing protein. | 0.800 |
RO3G_09652 | RO3G_04340 | I1C912 | I1BTV5 | Uncharacterized protein. | General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. | 0.999 |
RO3G_09652 | RO3G_05745 | I1C912 | I1BXW0 | Uncharacterized protein. | Uncharacterized protein; Belongs to the actin family. | 0.442 |
RO3G_09652 | RO3G_09858 | I1C912 | I1C9L8 | Uncharacterized protein. | Uncharacterized protein. | 0.999 |
RO3G_09652 | RO3G_12052 | I1C912 | I1CFW1 | Uncharacterized protein. | Helicase ATP-binding domain-containing protein. | 0.999 |
RO3G_09652 | RO3G_12924 | I1C912 | I1CID3 | Uncharacterized protein. | BSD domain-containing protein. | 0.999 |
RO3G_09652 | RO3G_15755 | I1C912 | I1CRG4 | Uncharacterized protein. | HMG box domain-containing protein. | 0.798 |
RO3G_09858 | RO3G_04340 | I1C9L8 | I1BTV5 | Uncharacterized protein. | General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. | 0.999 |
RO3G_09858 | RO3G_09652 | I1C9L8 | I1C912 | Uncharacterized protein. | Uncharacterized protein. | 0.999 |
RO3G_09858 | RO3G_12052 | I1C9L8 | I1CFW1 | Uncharacterized protein. | Helicase ATP-binding domain-containing protein. | 0.999 |
RO3G_09858 | RO3G_12924 | I1C9L8 | I1CID3 | Uncharacterized protein. | BSD domain-containing protein. | 0.999 |
RO3G_09858 | RO3G_15755 | I1C9L8 | I1CRG4 | Uncharacterized protein. | HMG box domain-containing protein. | 0.797 |
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