STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CIMG_00435DsDNA-binding protein PDCD5, variant. (129 aa)    
Predicted Functional Partners:
CIMG_08166
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
    0.838
CIMG_04646
60S ribosomal protein L30.
   
    0.830
CIMG_08963
60S ribosomal protein L35.
   
    0.829
CIMG_06970
Elongation factor 1-beta; Belongs to the EF-1-beta/EF-1-delta family.
   
    0.829
CIMG_09792
Ribosomal protein L24.
   
    0.828
CIMG_03903
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
    0.828
CIMG_04572
Ribosomal protein L34.
   
    0.828
CIMG_06370
60S ribosomal protein L25.
   
    0.813
CIMG_11886
Prefoldin subunit 1.
   
    0.799
CIMG_01482
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
    0.740
Your Current Organism:
Coccidioides immitis RS
NCBI taxonomy Id: 246410
Other names: C. immitis RS
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