Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CIMG_02157 | CIMG_02210 | J3KKS5 | J3KKW4 | Ribosome biogenesis protein. | Nucleolar protein 12. | 0.953 |
CIMG_02157 | CIMG_04736 | J3KKS5 | J3KE43 | Ribosome biogenesis protein. | rRNA processing protein Pwp1. | 0.912 |
CIMG_02157 | CIMG_06910 | J3KKS5 | J3K977 | Ribosome biogenesis protein. | CCAAT-box-binding transcription factor. | 0.942 |
CIMG_02157 | CIMG_09253 | J3KKS5 | J3K1Y0 | Ribosome biogenesis protein. | rRNA processing protein. | 0.995 |
CIMG_02157 | CIMG_09441 | J3KKS5 | J3K2D4 | Ribosome biogenesis protein. | DNA-binding protein, 42 kDa. | 0.977 |
CIMG_02157 | DBP9 | J3KKS5 | Q1DWF4 | Ribosome biogenesis protein. | ATP-dependent RNA helicase DBP9; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs; Belongs to the DEAD box helicase family. DDX56/DBP9 subfamily. | 0.983 |
CIMG_02157 | ERB1 | J3KKS5 | Q1DRB6 | Ribosome biogenesis protein. | Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. | 0.990 |
CIMG_02157 | MAK5 | J3KKS5 | Q1E7Y4 | Ribosome biogenesis protein. | ATP-dependent RNA helicase MAK5; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs; Belongs to the DEAD box helicase family. DDX24/MAK5 subfamily. | 0.767 |
CIMG_02157 | SPB1 | J3KKS5 | A0A0E1RUQ7 | Ribosome biogenesis protein. | AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. | 0.963 |
CIMG_02157 | YTM1 | J3KKS5 | Q1DJF7 | Ribosome biogenesis protein. | Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. | 0.978 |
CIMG_02210 | CIMG_02157 | J3KKW4 | J3KKS5 | Nucleolar protein 12. | Ribosome biogenesis protein. | 0.953 |
CIMG_02210 | CIMG_04736 | J3KKW4 | J3KE43 | Nucleolar protein 12. | rRNA processing protein Pwp1. | 0.896 |
CIMG_02210 | CIMG_06910 | J3KKW4 | J3K977 | Nucleolar protein 12. | CCAAT-box-binding transcription factor. | 0.954 |
CIMG_02210 | CIMG_09253 | J3KKW4 | J3K1Y0 | Nucleolar protein 12. | rRNA processing protein. | 0.911 |
CIMG_02210 | CIMG_09441 | J3KKW4 | J3K2D4 | Nucleolar protein 12. | DNA-binding protein, 42 kDa. | 0.889 |
CIMG_02210 | DBP9 | J3KKW4 | Q1DWF4 | Nucleolar protein 12. | ATP-dependent RNA helicase DBP9; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs; Belongs to the DEAD box helicase family. DDX56/DBP9 subfamily. | 0.926 |
CIMG_02210 | ERB1 | J3KKW4 | Q1DRB6 | Nucleolar protein 12. | Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. | 0.906 |
CIMG_02210 | MAK5 | J3KKW4 | Q1E7Y4 | Nucleolar protein 12. | ATP-dependent RNA helicase MAK5; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs; Belongs to the DEAD box helicase family. DDX24/MAK5 subfamily. | 0.900 |
CIMG_02210 | SPB1 | J3KKW4 | A0A0E1RUQ7 | Nucleolar protein 12. | AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. | 0.942 |
CIMG_02210 | YTM1 | J3KKW4 | Q1DJF7 | Nucleolar protein 12. | Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. | 0.888 |
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