Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CIMG_02246 | CIMG_03054 | J3KKY5 | J3KAI1 | rRNA maturation protein. | Ribosome assembly protein Noc2. | 0.923 |
CIMG_02246 | CIMG_06910 | J3KKY5 | J3K977 | rRNA maturation protein. | CCAAT-box-binding transcription factor. | 0.920 |
CIMG_02246 | CIMG_09253 | J3KKY5 | J3K1Y0 | rRNA maturation protein. | rRNA processing protein. | 0.833 |
CIMG_02246 | DBP9 | J3KKY5 | Q1DWF4 | rRNA maturation protein. | ATP-dependent RNA helicase DBP9; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs; Belongs to the DEAD box helicase family. DDX56/DBP9 subfamily. | 0.889 |
CIMG_02246 | ERB1 | J3KKY5 | Q1DRB6 | rRNA maturation protein. | Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. | 0.839 |
CIMG_02246 | HAS1 | J3KKY5 | Q1EA54 | rRNA maturation protein. | ATP-dependent RNA helicase HAS1; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA. | 0.904 |
CIMG_02246 | MAK5 | J3KKY5 | Q1E7Y4 | rRNA maturation protein. | ATP-dependent RNA helicase MAK5; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs; Belongs to the DEAD box helicase family. DDX24/MAK5 subfamily. | 0.942 |
CIMG_02246 | NOP7 | J3KKY5 | Q1DLJ4 | rRNA maturation protein. | Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. | 0.876 |
CIMG_02246 | ROK1 | J3KKY5 | Q1E306 | rRNA maturation protein. | ATP-dependent RNA helicase ROK1; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA. | 0.992 |
CIMG_02246 | YTM1 | J3KKY5 | Q1DJF7 | rRNA maturation protein. | Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. | 0.667 |
CIMG_03054 | CIMG_02246 | J3KAI1 | J3KKY5 | Ribosome assembly protein Noc2. | rRNA maturation protein. | 0.923 |
CIMG_03054 | CIMG_06910 | J3KAI1 | J3K977 | Ribosome assembly protein Noc2. | CCAAT-box-binding transcription factor. | 0.997 |
CIMG_03054 | CIMG_09253 | J3KAI1 | J3K1Y0 | Ribosome assembly protein Noc2. | rRNA processing protein. | 0.994 |
CIMG_03054 | DBP9 | J3KAI1 | Q1DWF4 | Ribosome assembly protein Noc2. | ATP-dependent RNA helicase DBP9; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs; Belongs to the DEAD box helicase family. DDX56/DBP9 subfamily. | 0.926 |
CIMG_03054 | ERB1 | J3KAI1 | Q1DRB6 | Ribosome assembly protein Noc2. | Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. | 0.997 |
CIMG_03054 | HAS1 | J3KAI1 | Q1EA54 | Ribosome assembly protein Noc2. | ATP-dependent RNA helicase HAS1; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA. | 0.992 |
CIMG_03054 | MAK5 | J3KAI1 | Q1E7Y4 | Ribosome assembly protein Noc2. | ATP-dependent RNA helicase MAK5; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs; Belongs to the DEAD box helicase family. DDX24/MAK5 subfamily. | 0.902 |
CIMG_03054 | NOP7 | J3KAI1 | Q1DLJ4 | Ribosome assembly protein Noc2. | Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. | 0.997 |
CIMG_03054 | ROK1 | J3KAI1 | Q1E306 | Ribosome assembly protein Noc2. | ATP-dependent RNA helicase ROK1; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA. | 0.667 |
CIMG_03054 | YTM1 | J3KAI1 | Q1DJF7 | Ribosome assembly protein Noc2. | Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. | 0.989 |
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