STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L9JJ05_TUPCHPutative ATP-dependent RNA helicase DDX28. (559 aa)    
Predicted Functional Partners:
UTP3
Something about silencing protein 10.
   
 0.960
L9L2H8_TUPCH
Neuroguidin.
   
 0.943
L8Y4E8_TUPCH
RNA methyltransferase-like protein 1.
  
 
 0.904
L8YBH7_TUPCH
Ribosome biogenesis protein BOP1.
   
 0.855
PDCD11
Protein RRP5 like protein.
  
 0.853
TTC21B
ESF1 like protein.
   
 
 0.844
ESF1
ESF1 like protein.
   
 
 0.844
NOP14
Nucleolar protein 14.
   
 0.843
MRPL4
39S ribosomal protein L4, mitochondrial.
   
 0.835
DDX49
Putative ATP-dependent RNA helicase DDX49; Belongs to the DEAD box helicase family.
  
 
0.833
Your Current Organism:
Tupaia chinensis
NCBI taxonomy Id: 246437
Other names: Chinese tree shrew, T. chinensis, Tupaia belangeri chinensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.