STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTP4Receptor-transporting protein 4. (251 aa)    
Predicted Functional Partners:
L9JDY0_TUPCH
Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.
   
  
 0.833
IFI44
Interferon-induced protein 44.
   
  
 0.823
RSAD2
Radical S-adenosyl methionine domain-containing protein 2.
   
  
 0.783
ISG15
Ubiquitin-like protein ISG15.
   
  
 0.779
IRF7
Interferon regulatory factor 7.
   
  
 0.772
L9L0E1_TUPCH
RING finger protein 213.
   
  
 0.709
IFI35
Interferon-induced 35 kDa protein.
   
  
 0.699
L9J9C2_TUPCH
Interferon-induced helicase C domain-containing protein 1.
   
  
 0.683
L9L955_TUPCH
Z-DNA-binding protein 1.
   
    0.654
DHX58
Putative ATP-dependent RNA helicase DHX58.
   
  
 0.640
Your Current Organism:
Tupaia chinensis
NCBI taxonomy Id: 246437
Other names: Chinese tree shrew, T. chinensis, Tupaia belangeri chinensis
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