STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L9KXD2_TUPCHUV excision repair protein RAD23 like protein B. (367 aa)    
Predicted Functional Partners:
L9KFK4_TUPCH
Histone H2A deubiquitinase MYSM1.
   
 0.984
L9KN05_TUPCH
Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase.
    
 0.932
UBA52
Ubiquitin-60S ribosomal protein L40.
   
 0.925
L8Y2W4_TUPCH
26S proteasome non-ATPase regulatory subunit 4.
   
 0.904
PSMD2
26S proteasome non-ATPase regulatory subunit 2.
   
 0.882
L9LD85_TUPCH
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.882
PSMC2
26S protease regulatory subunit 7; Belongs to the AAA ATPase family.
    
 0.835
TRAF7
E3 ubiquitin-protein ligase TRAF7.
    
 0.825
ASNA1
ATPase ASNA1; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. [...]
   
 0.824
L9JKG2_TUPCH
UBX domain-containing protein 7.
    
 0.822
Your Current Organism:
Tupaia chinensis
NCBI taxonomy Id: 246437
Other names: Chinese tree shrew, T. chinensis, Tupaia belangeri chinensis
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