L9KY08_TUPCH protein (Tupaia chinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

L9KY08_TUPCH

Nucleoporin-like protein 2. (533 aa)

Predicted Functional Partners:

L9KGJ2_TUPCH

0.952

NUP214

0.829

L9KLM7_TUPCH

0.812

L9L960_TUPCH

0.792

L9KMT6_TUPCH

0.771

FAU

0.771

NUP58

0.732

RAB13

0.731

NUP93

0.726

PHYHD1

0.725

Your Current Organism:

Tupaia chinensis

NCBI taxonomy Id: 246437
Other names: Chinese tree shrew, T. chinensis, Tupaia belangeri chinensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FAU	L9KMT6_TUPCH	L9KQX1	L9KMT6	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.989
FAU	L9KY08_TUPCH	L9KQX1	L9KY08	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Nucleoporin-like protein 2.	0.771
L9KGJ2_TUPCH	L9KLM7_TUPCH	L9KGJ2	L9KLM7	Nucleoporin GLE1.	Nuclear pore complex protein Nup88.	0.832
L9KGJ2_TUPCH	L9KY08_TUPCH	L9KGJ2	L9KY08	Nucleoporin GLE1.	Nucleoporin-like protein 2.	0.952
L9KGJ2_TUPCH	L9L960_TUPCH	L9KGJ2	L9L960	Nucleoporin GLE1.	mRNA export factor.	0.965
L9KGJ2_TUPCH	NUP214	L9KGJ2	L8Y8B9	Nucleoporin GLE1.	Nuclear pore complex protein Nup214.	0.985
L9KGJ2_TUPCH	NUP58	L9KGJ2	L9JAQ1	Nucleoporin GLE1.	Nucleoporin p58/p45.	0.954
L9KGJ2_TUPCH	NUP93	L9KGJ2	L9KTD5	Nucleoporin GLE1.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.876
L9KGJ2_TUPCH	PHYHD1	L9KGJ2	L9KH12	Nucleoporin GLE1.	Nucleoporin NUP188 like protein.	0.693
L9KGJ2_TUPCH	RAB13	L9KGJ2	L9JAC9	Nucleoporin GLE1.	Nuclear pore membrane glycoprotein 210-like protein.	0.630
L9KLM7_TUPCH	L9KGJ2_TUPCH	L9KLM7	L9KGJ2	Nuclear pore complex protein Nup88.	Nucleoporin GLE1.	0.832
L9KLM7_TUPCH	L9KY08_TUPCH	L9KLM7	L9KY08	Nuclear pore complex protein Nup88.	Nucleoporin-like protein 2.	0.812
L9KLM7_TUPCH	L9L960_TUPCH	L9KLM7	L9L960	Nuclear pore complex protein Nup88.	mRNA export factor.	0.874
L9KLM7_TUPCH	NUP214	L9KLM7	L8Y8B9	Nuclear pore complex protein Nup88.	Nuclear pore complex protein Nup214.	0.996
L9KLM7_TUPCH	NUP58	L9KLM7	L9JAQ1	Nuclear pore complex protein Nup88.	Nucleoporin p58/p45.	0.974
L9KLM7_TUPCH	NUP93	L9KLM7	L9KTD5	Nuclear pore complex protein Nup88.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.979
L9KLM7_TUPCH	PHYHD1	L9KLM7	L9KH12	Nuclear pore complex protein Nup88.	Nucleoporin NUP188 like protein.	0.974
L9KLM7_TUPCH	RAB13	L9KLM7	L9JAC9	Nuclear pore complex protein Nup88.	Nuclear pore membrane glycoprotein 210-like protein.	0.968
L9KMT6_TUPCH	FAU	L9KMT6	L9KQX1	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.989
L9KMT6_TUPCH	L9KY08_TUPCH	L9KMT6	L9KY08	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Nucleoporin-like protein 2.	0.771