STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L9LAI1_TUPCHX-ray repair cross-complementing protein 5. (442 aa)    
Predicted Functional Partners:
L8Y887_TUPCH
Werner syndrome ATP-dependent helicase.
    
 
 0.995
LIG4
DNA ligase.
   
 0.923
L8Y0S3_TUPCH
DNA-dependent protein kinase catalytic subunit; Belongs to the PI3/PI4-kinase family.
   
 0.917
L8YAV1_TUPCH
Double-strand break repair protein MRE11A.
   
 0.864
L9KNQ1_TUPCH
Aprataxin and PNK-like factor.
    
 
 0.832
XRCC6
X-ray repair cross-complementing protein 6.
   
 0.829
L9KT43_TUPCH
X-ray repair cross-complementing protein 6.
   
 0.829
L9KWW0_TUPCH
X-ray repair cross-complementing protein 6.
   
 0.829
LIG1
DNA ligase.
   
 0.800
LIG3
DNA ligase.
   
 0.773
Your Current Organism:
Tupaia chinensis
NCBI taxonomy Id: 246437
Other names: Chinese tree shrew, T. chinensis, Tupaia belangeri chinensis
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