L9LCQ3_TUPCH protein (Tupaia chinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

L9LCQ3_TUPCH

SH3 domain-binding protein 4. (777 aa)

Predicted Functional Partners:

L9KPH3_TUPCH

0.623

L9KN58_TUPCH

0.614

TMEM82

0.576

L9L494_TUPCH

0.544

LAMTOR2

0.501

EPS15

0.500

LAMTOR1

0.487

L9JP61_TUPCH

0.483

RRAGD

0.481

ATP6V1C1

0.478

Your Current Organism:

Tupaia chinensis

NCBI taxonomy Id: 246437
Other names: Chinese tree shrew, T. chinensis, Tupaia belangeri chinensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP6V1C1	L9JP61_TUPCH	L9L0C5	L9JP61	V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Hepatitis B virus X-interacting protein like protein.	0.568
ATP6V1C1	L9KN58_TUPCH	L9L0C5	L9KN58	V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Ras-related GTP-binding protein B.	0.603
ATP6V1C1	L9LCQ3_TUPCH	L9L0C5	L9LCQ3	V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	SH3 domain-binding protein 4.	0.478
ATP6V1C1	LAMTOR1	L9L0C5	L9LAY9	V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Ragulator complex protein LAMTOR1.	0.834
ATP6V1C1	LAMTOR2	L9L0C5	L9KBG3	V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Ragulator complex protein LAMTOR2.	0.855
ATP6V1C1	RRAGD	L9L0C5	L9K9C2	V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Ras-related GTP-binding protein D.	0.601
EPS15	L9LCQ3_TUPCH	L9KVV6	L9LCQ3	Epidermal growth factor receptor substrate 15.	SH3 domain-binding protein 4.	0.500
L9JP61_TUPCH	ATP6V1C1	L9JP61	L9L0C5	Hepatitis B virus X-interacting protein like protein.	V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.568
L9JP61_TUPCH	L9KN58_TUPCH	L9JP61	L9KN58	Hepatitis B virus X-interacting protein like protein.	Ras-related GTP-binding protein B.	0.961
L9JP61_TUPCH	L9LCQ3_TUPCH	L9JP61	L9LCQ3	Hepatitis B virus X-interacting protein like protein.	SH3 domain-binding protein 4.	0.483
L9JP61_TUPCH	LAMTOR1	L9JP61	L9LAY9	Hepatitis B virus X-interacting protein like protein.	Ragulator complex protein LAMTOR1.	0.999
L9JP61_TUPCH	LAMTOR2	L9JP61	L9KBG3	Hepatitis B virus X-interacting protein like protein.	Ragulator complex protein LAMTOR2.	0.999
L9JP61_TUPCH	RRAGD	L9JP61	L9K9C2	Hepatitis B virus X-interacting protein like protein.	Ras-related GTP-binding protein D.	0.990
L9KN58_TUPCH	ATP6V1C1	L9KN58	L9L0C5	Ras-related GTP-binding protein B.	V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.603
L9KN58_TUPCH	L9JP61_TUPCH	L9KN58	L9JP61	Ras-related GTP-binding protein B.	Hepatitis B virus X-interacting protein like protein.	0.961
L9KN58_TUPCH	L9LCQ3_TUPCH	L9KN58	L9LCQ3	Ras-related GTP-binding protein B.	SH3 domain-binding protein 4.	0.614
L9KN58_TUPCH	LAMTOR1	L9KN58	L9LAY9	Ras-related GTP-binding protein B.	Ragulator complex protein LAMTOR1.	0.949
L9KN58_TUPCH	LAMTOR2	L9KN58	L9KBG3	Ras-related GTP-binding protein B.	Ragulator complex protein LAMTOR2.	0.964
L9KN58_TUPCH	RRAGD	L9KN58	L9K9C2	Ras-related GTP-binding protein B.	Ras-related GTP-binding protein D.	0.999
L9KPH3_TUPCH	L9L494_TUPCH	L9KPH3	L9L494	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	PAX-interacting protein 1.	0.576