STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KEZ49681.1Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)    
Predicted Functional Partners:
rnmV
Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.
 
     0.697
KEZ54119.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.677
rsmA
16S rRNA methyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
       0.654
KEZ49682.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.654
KEZ49683.1
Protein sspF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.648
KEZ49678.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.640
KEZ54128.1
Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.636
KEZ51946.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.630
KEZ52018.1
RpiR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.622
KEZ53462.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0736 family.
  
     0.576
Your Current Organism:
Bacillus indicus
NCBI taxonomy Id: 246786
Other names: B. indicus, Bacillus cibi, Bacillus cibi Yoon et al. 2005, Bacillus indicus Suresh et al. 2004 emend. Stropko et al. 2014, Bacillus sp. KU12, Bacillus sp. KU14, DSM 15820, DSM 16189 [[Bacillus cibi]], JCM 12168, KCTC 3880 [[Bacillus cibi]], LMG 22858, LMG:22858, MTCC 4374, strain JG-30 [[Bacillus cibi]], strain Sd/3
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