STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zraR_1Transcriptional regulatory protein ZraR. (461 aa)    
Predicted Functional Partners:
zraS_1
Sensor protein ZraS.
 
 
 0.947
rpoN
RNA polymerase sigma-54 factor.
 
  
 0.797
zraS_2
Sensor protein ZraS.
 
 
 0.717
macB_1
Macrolide export ATP-binding/permease protein MacB.
 
     0.715
kinA
Sporulation kinase A.
 
 
 0.709
dctB_2
C4-dicarboxylate transport sensor protein DctB.
 
 
 0.671
ALJ57343.1
Hypothetical protein.
     
 0.554
lolD_1
Lipoprotein-releasing system ATP-binding protein LolD.
 
     0.507
macB_7
Macrolide export ATP-binding/permease protein MacB.
 
     0.490
macB_16
Macrolide export ATP-binding/permease protein MacB.
 
     0.478
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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