Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lcfB_1Long-chain-fatty-acid--CoA ligase. (465 aa)    
Predicted Functional Partners:
ALJ57802.1
Hypothetical protein.
 
 
 0.958
fabG_2
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
 
 
 0.833
ALJ57806.1
Hypothetical protein.
  
 
 0.819
fabG_3
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
 
 0.787
fabH_1
3-oxoacyl-[acyl-carrier-protein] synthase 3.
     
 0.762
epsM_1
Putative acetyltransferase EpsM.
 
   
 0.737
ALJ57808.1
Hypothetical protein.
     
 0.670
ALJ57809.1
Hypothetical protein.
     
 0.661
ALJ62526.1
Long-chain-fatty-acid--CoA ligase FadD15.
 
 
 0.604
ALJ57798.1
Putative metallo-hydrolase.
 
  
 0.581
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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