STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vioA_1dTDP-4-amino-4,6-dideoxy-D-glucose transaminase. (362 aa)    
Predicted Functional Partners:
gfo_1
Glucose--fructose oxidoreductase precursor.
  
  
 0.828
ALJ57813.1
NDP-hexose 2,3-dehydratase.
  
  
 0.797
ALJ57814.1
NDP-hexose 2,3-dehydratase.
  
  
 0.797
tuaB_1
Teichuronic acid biosynthesis protein TuaB.
 
  
 0.784
ALJ57810.1
Hypothetical protein.
       0.655
wcaJ
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
 
  
 0.642
rffG
dTDP-glucose 4,6-dehydratase 2; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
 0.600
ALJ57808.1
Hypothetical protein.
 
  
 0.553
epsM_1
Putative acetyltransferase EpsM.
  
  
 0.548
epsE_3
Putative glycosyltransferase EpsE.
 
  
 0.521
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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