Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kpsD_1Polysialic acid transport protein KpsD precursor. (807 aa)    
Predicted Functional Partners:
ALJ57816.1
LPS O-antigen length regulator.
 
  
 0.952
ptk_1
Tyrosine-protein kinase ptk.
  
 
 0.809
ptk_2
Tyrosine-protein kinase ptk.
  
 
 0.809
ptk_3
Tyrosine-protein kinase ptk.
  
 
 0.809
ptk_4
Tyrosine-protein kinase ptk.
  
 
 0.809
etk
Tyrosine-protein kinase etk.
  
 
 0.809
ALJ58017.1
LPS O-antigen length regulator.
 
  
 0.803
upxZ_9
Hypothetical protein.
       0.645
wcaJ
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
  
  
 0.645
cld
Hypothetical protein.
 
 
 0.627
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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