Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALJ57856.1 | yigZ | BcellWH2_00588 | BcellWH2_00590 | HpaII restriction endonuclease. | IMPACT family member YigZ. | 0.430 |
ALJ57860.1 | ALJ57861.1 | BcellWH2_00592 | BcellWH2_00593 | Putative type I restriction enzymeP M protein. | Hypothetical protein. | 0.795 |
ALJ57860.1 | hsdR_1 | BcellWH2_00592 | BcellWH2_00591 | Putative type I restriction enzymeP M protein. | Type-1 restriction enzyme R protein. | 0.977 |
ALJ57860.1 | yigZ | BcellWH2_00592 | BcellWH2_00590 | Putative type I restriction enzymeP M protein. | IMPACT family member YigZ. | 0.503 |
ALJ57861.1 | ALJ57860.1 | BcellWH2_00593 | BcellWH2_00592 | Hypothetical protein. | Putative type I restriction enzymeP M protein. | 0.795 |
ALJ57861.1 | hsdR_1 | BcellWH2_00593 | BcellWH2_00591 | Hypothetical protein. | Type-1 restriction enzyme R protein. | 0.794 |
ALJ57861.1 | yigZ | BcellWH2_00593 | BcellWH2_00590 | Hypothetical protein. | IMPACT family member YigZ. | 0.486 |
ALJ57877.1 | serA | BcellWH2_00609 | BcellWH2_00610 | Hypothetical protein. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.738 |
ALJ57877.1 | serC | BcellWH2_00609 | BcellWH2_00611 | Hypothetical protein. | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.655 |
ALJ57877.1 | yigZ | BcellWH2_00609 | BcellWH2_00590 | Hypothetical protein. | IMPACT family member YigZ. | 0.430 |
corA | yigZ | BcellWH2_02397 | BcellWH2_00590 | Magnesium transport protein CorA. | IMPACT family member YigZ. | 0.420 |
hsdR_1 | ALJ57860.1 | BcellWH2_00591 | BcellWH2_00592 | Type-1 restriction enzyme R protein. | Putative type I restriction enzymeP M protein. | 0.977 |
hsdR_1 | ALJ57861.1 | BcellWH2_00591 | BcellWH2_00593 | Type-1 restriction enzyme R protein. | Hypothetical protein. | 0.794 |
hsdR_1 | yigZ | BcellWH2_00591 | BcellWH2_00590 | Type-1 restriction enzyme R protein. | IMPACT family member YigZ. | 0.486 |
rsmF | rsmG | BcellWH2_01516 | BcellWH2_00576 | Ribosomal RNA small subunit methyltransferase F. | Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.427 |
rsmF | yigZ | BcellWH2_01516 | BcellWH2_00590 | Ribosomal RNA small subunit methyltransferase F. | IMPACT family member YigZ. | 0.486 |
rsmG | rsmF | BcellWH2_00576 | BcellWH2_01516 | Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | Ribosomal RNA small subunit methyltransferase F. | 0.427 |
rsmG | yigZ | BcellWH2_00576 | BcellWH2_00590 | Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | IMPACT family member YigZ. | 0.430 |
serA | ALJ57877.1 | BcellWH2_00610 | BcellWH2_00609 | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Hypothetical protein. | 0.738 |
serA | serC | BcellWH2_00610 | BcellWH2_00611 | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.993 |
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