Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ycnEPutative monooxygenase YcnE. (91 aa)    
Predicted Functional Partners:
ALJ58629.1
Glyoxalase-like domain protein.
       0.623
ALJ60063.1
MG2 domain protein.
 
   
 0.589
ALJ62010.1
Hypothetical protein.
  
     0.576
ALJ59370.1
Hypothetical protein.
  
   
 0.557
ALJ60721.1
Biopolymer transport protein ExbD/TolR.
  
     0.536
cdhR
HTH-type transcriptional regulator CdhR.
 
     0.533
exbD
Biopolymer transport protein ExbD/TolR.
  
     0.519
norM_3
Multidrug resistance protein NorM.
 
     0.515
rutC
Putative aminoacrylate peracid reductase RutC.
  
     0.513
ALJ60724.1
Tetratricopeptide repeat protein.
 
    0.457
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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