Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALJ58658.1 | bamA_2 | BcellWH2_01397 | BcellWH2_02151 | Hypothetical protein. | Outer membrane protein assembly factor BamA precursor. | 0.404 |
ALJ58658.1 | bamA_4 | BcellWH2_01397 | BcellWH2_05465 | Hypothetical protein. | Outer membrane protein assembly factor BamA precursor. | 0.522 |
ALJ58658.1 | dxr | BcellWH2_01397 | BcellWH2_01401 | Hypothetical protein. | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family. | 0.621 |
ALJ58658.1 | lepB_2 | BcellWH2_01397 | BcellWH2_02533 | Hypothetical protein. | Signal peptidase I; Belongs to the peptidase S26 family. | 0.486 |
ALJ58658.1 | murA | BcellWH2_01397 | BcellWH2_01398 | Hypothetical protein. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.794 |
ALJ58658.1 | nlpD_1 | BcellWH2_01397 | BcellWH2_01400 | Hypothetical protein. | Murein hydrolase activator NlpD precursor. | 0.670 |
ALJ58658.1 | rseP | BcellWH2_01397 | BcellWH2_01402 | Hypothetical protein. | Putative zinc metalloprotease. | 0.792 |
bamA_2 | ALJ58658.1 | BcellWH2_02151 | BcellWH2_01397 | Outer membrane protein assembly factor BamA precursor. | Hypothetical protein. | 0.404 |
bamA_2 | bamA_4 | BcellWH2_02151 | BcellWH2_05465 | Outer membrane protein assembly factor BamA precursor. | Outer membrane protein assembly factor BamA precursor. | 0.722 |
bamA_2 | ispU | BcellWH2_02151 | BcellWH2_02150 | Outer membrane protein assembly factor BamA precursor. | Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific); Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.818 |
bamA_2 | lepB_2 | BcellWH2_02151 | BcellWH2_02533 | Outer membrane protein assembly factor BamA precursor. | Signal peptidase I; Belongs to the peptidase S26 family. | 0.775 |
bamA_2 | rseP | BcellWH2_02151 | BcellWH2_01402 | Outer membrane protein assembly factor BamA precursor. | Putative zinc metalloprotease. | 0.754 |
bamA_2 | yidC | BcellWH2_02151 | BcellWH2_00566 | Outer membrane protein assembly factor BamA precursor. | Membrane protein insertase YidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.664 |
bamA_4 | ALJ58658.1 | BcellWH2_05465 | BcellWH2_01397 | Outer membrane protein assembly factor BamA precursor. | Hypothetical protein. | 0.522 |
bamA_4 | bamA_2 | BcellWH2_05465 | BcellWH2_02151 | Outer membrane protein assembly factor BamA precursor. | Outer membrane protein assembly factor BamA precursor. | 0.722 |
bamA_4 | lepB_2 | BcellWH2_05465 | BcellWH2_02533 | Outer membrane protein assembly factor BamA precursor. | Signal peptidase I; Belongs to the peptidase S26 family. | 0.665 |
bamA_4 | rseP | BcellWH2_05465 | BcellWH2_01402 | Outer membrane protein assembly factor BamA precursor. | Putative zinc metalloprotease. | 0.717 |
bamA_4 | yidC | BcellWH2_05465 | BcellWH2_00566 | Outer membrane protein assembly factor BamA precursor. | Membrane protein insertase YidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.612 |
dxr | ALJ58658.1 | BcellWH2_01401 | BcellWH2_01397 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family. | Hypothetical protein. | 0.621 |
dxr | gltB_2 | BcellWH2_01401 | BcellWH2_05271 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family. | Ferredoxin-dependent glutamate synthase 1. | 0.443 |
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