Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
xynD_2Arabinoxylan arabinofuranohydrolase precursor. (800 aa)    
Predicted Functional Partners:
ptpA_2
Prolyl tripeptidyl peptidase precursor.
 
     0.783
hypBA1_3
Non-reducing end beta-L-arabinofuranosidase.
     
 0.717
xynB_3
Beta-xylosidase.
  
    0.668
ALJ59247.1
Retaining alpha-galactosidase precursor.
       0.598
ALJ60077.1
Glycosyl hydrolases family 43.
  
    0.594
xynB_1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
    0.547
ALJ59254.1
Hypothetical protein.
 
   
 0.525
xynB_10
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
    0.504
abn-ts_1
Intracellular endo-alpha-(1->5)-L-arabinanase.
  
     0.496
xynB_4
Beta-xylosidase.
  
    0.489
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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