Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALJ59252.1TonB dependent receptor. (1000 aa)    
Predicted Functional Partners:
ALJ59253.1
SusD family protein.
 
     0.935
ALJ58368.1
SusD family protein.
 
 
   0.768
ALJ59678.1
SusD family protein.
 
     0.767
ALJ60383.1
SusD family protein.
 
 
   0.766
ALJ59080.1
SusD family protein.
  
 
   0.748
ALJ59518.1
SusD family protein.
 
 
   0.737
ALJ58432.1
SusD family protein.
  
 
   0.736
ALJ61713.1
SusD family protein.
 
     0.735
ALJ60565.1
SusD family protein.
 
 
   0.715
ALJ60528.1
SusD family protein.
 
 
   0.714
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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