STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hypBA1_4Non-reducing end beta-L-arabinofuranosidase. (664 aa)    
Predicted Functional Partners:
abf2
Intracellular exo-alpha-L-arabinofuranosidase 2.
 
   
 0.708
ALJ59254.1
Hypothetical protein.
 
     0.676
ALJ59253.1
SusD family protein.
       0.587
nphR
Transcriptional activator NphR.
 
     0.575
ALJ59252.1
TonB dependent receptor.
       0.547
smc_2
Chromosome partition protein Smc.
  
     0.537
ALJ60214.1
Extracellular exo-alpha-L-arabinofuranosidase precursor.
 
  
 0.535
ALJ60076.1
Extracellular exo-alpha-L-arabinofuranosidase precursor.
 
  
 0.532
ALJ60208.1
Ricin-type beta-trefoil lectin domain protein.
 
   
 0.519
ALJ59819.1
Extracellular exo-alpha-L-arabinofuranosidase precursor.
 
  
 0.512
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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