close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bamA_2Outer membrane protein assembly factor BamA precursor. (880 aa)    
Predicted Functional Partners:
ALJ59393.1
Periplasmic chaperone.
 
  
 0.957
bamD
Outer membrane protein assembly factor BamD.
 
 
 0.911
hlpA
Outer membrane protein (OmpH-like).
 
  
 0.865
ALJ59390.1
Hypothetical protein.
 
 
 
 0.853
ALJ59389.1
Hypothetical protein.
  
 
 0.832
ispU
Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific); Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
  
 0.818
surA
Chaperone SurA precursor.
 
 
 0.804
ALJ58855.1
Hypothetical protein.
 
  
 0.789
lepB_2
Signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.775
ALJ59194.1
Putative permease YjgP/YjgQ family protein.
 
   
 0.765
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.