Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALJ59396.1 | hlpA | BcellWH2_02155 | BcellWH2_02153 | Hypothetical protein. | Outer membrane protein (OmpH-like). | 0.468 |
ALJ59396.1 | murI | BcellWH2_02155 | BcellWH2_02154 | Hypothetical protein. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.715 |
ALJ59396.1 | proA | BcellWH2_02155 | BcellWH2_02176 | Hypothetical protein. | Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. | 0.430 |
ALJ59396.1 | proB | BcellWH2_02155 | BcellWH2_02156 | Hypothetical protein. | Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. | 0.845 |
argF | gltB_2 | BcellWH2_02177 | BcellWH2_05271 | N-acetylornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. | Ferredoxin-dependent glutamate synthase 1. | 0.617 |
argF | proA | BcellWH2_02177 | BcellWH2_02176 | N-acetylornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. | Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. | 0.800 |
argF | proB | BcellWH2_02177 | BcellWH2_02156 | N-acetylornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. | Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. | 0.528 |
argF | thrA | BcellWH2_02177 | BcellWH2_03608 | N-acetylornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. | Bifunctional aspartokinase/homoserine dehydrogenase 1. | 0.575 |
gltB_2 | argF | BcellWH2_05271 | BcellWH2_02177 | Ferredoxin-dependent glutamate synthase 1. | N-acetylornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. | 0.617 |
gltB_2 | murI | BcellWH2_05271 | BcellWH2_02154 | Ferredoxin-dependent glutamate synthase 1. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.586 |
gltB_2 | proA | BcellWH2_05271 | BcellWH2_02176 | Ferredoxin-dependent glutamate synthase 1. | Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. | 0.887 |
gltB_2 | proB | BcellWH2_05271 | BcellWH2_02156 | Ferredoxin-dependent glutamate synthase 1. | Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. | 0.557 |
gltB_2 | proC | BcellWH2_05271 | BcellWH2_02108 | Ferredoxin-dependent glutamate synthase 1. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.564 |
gltB_2 | ribBA | BcellWH2_05271 | BcellWH2_01947 | Ferredoxin-dependent glutamate synthase 1. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.443 |
gltB_2 | serC | BcellWH2_05271 | BcellWH2_00611 | Ferredoxin-dependent glutamate synthase 1. | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.416 |
gltB_2 | thrA | BcellWH2_05271 | BcellWH2_03608 | Ferredoxin-dependent glutamate synthase 1. | Bifunctional aspartokinase/homoserine dehydrogenase 1. | 0.826 |
hlpA | ALJ59396.1 | BcellWH2_02153 | BcellWH2_02155 | Outer membrane protein (OmpH-like). | Hypothetical protein. | 0.468 |
hlpA | murI | BcellWH2_02153 | BcellWH2_02154 | Outer membrane protein (OmpH-like). | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.668 |
hlpA | proB | BcellWH2_02153 | BcellWH2_02156 | Outer membrane protein (OmpH-like). | Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. | 0.474 |
murI | ALJ59396.1 | BcellWH2_02154 | BcellWH2_02155 | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | Hypothetical protein. | 0.715 |
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