STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytrE_2ABC transporter ATP-binding protein YtrE. (229 aa)    
Predicted Functional Partners:
macB_3
Macrolide export ATP-binding/permease protein MacB.
 
 0.975
yknZ
FtsX-like permease family protein.
 
 
 0.967
ALJ59495.1
Putative efflux pump membrane fusion protein.
 
 
 0.938
macB_4
Macrolide export ATP-binding/permease protein MacB.
 
 0.915
salY_2
FtsX-like permease family protein.
 
 
 0.896
macB_17
Macrolide export ATP-binding/permease protein MacB.
 
 
 0.892
salY_1
FtsX-like permease family protein.
 
 
 0.892
macB_7
Macrolide export ATP-binding/permease protein MacB.
 
 
 0.888
macB_10
Macrolide export ATP-binding/permease protein MacB.
 
 
 0.853
macB_1
Macrolide export ATP-binding/permease protein MacB.
 
 
 0.851
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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