Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ALJ59640.1Tetratricopeptide repeat protein. (540 aa)    
Predicted Functional Partners:
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
     
 0.634
ALJ58753.1
Hypothetical protein.
 
 0.599
ALJ59642.1
SusD family protein.
 
 
   0.560
ALJ61614.1
Hypothetical protein.
 
     0.542
btuB_5
Vitamin B12 transporter BtuB.
 
     0.519
ALJ60004.1
Photosystem I assembly protein Ycf3.
 
   
 0.508
ALJ60165.1
CHAT domain protein.
 
     0.491
ALJ59541.1
Tetratricopeptide repeat protein.
  
     0.473
ALJ61060.1
Tetratricopeptide repeat protein.
  
     0.462
htpG
Chaperone protein HtpG.
 
 0.460
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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