Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
btuB_5Vitamin B12 transporter BtuB. (1046 aa)    
Predicted Functional Partners:
ALJ59642.1
SusD family protein.
 
  
 0.928
ALJ60823.1
SusD family protein.
  
     0.773
ALJ60870.1
SusD family protein.
 
     0.773
ALJ58361.1
SusD family protein.
 
   
 0.770
ALJ59759.1
SusD family protein.
 
  
 0.770
ALJ58427.1
SusD family protein.
 
   
 0.765
ALJ58825.1
SusD family protein.
 
  
 0.762
ALJ58443.1
SusD family protein.
 
     0.759
ALJ59174.1
SusD family protein.
 
     0.759
ALJ60487.1
SusD family protein.
 
  
 0.756
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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