Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sigLECF RNA polymerase sigma factor SigL; Belongs to the sigma-70 factor family. ECF subfamily. (174 aa)    
Predicted Functional Partners:
ALJ59650.1
Fec operon regulator FecR.
 
 
 0.905
sigW_2
ECF RNA polymerase sigma factor SigW; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.641
sigW_7
ECF RNA polymerase sigma factor SigW; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.631
sigW_5
ECF RNA polymerase sigma factor SigW; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.630
sigE_5
ECF RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.619
ALJ59648.1
Hypothetical protein.
  
    0.612
carQ_3
RNA polymerase sigma factor CarQ; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.611
ALJ58401.1
Fec operon regulator FecR.
 
 
 0.550
ALJ62360.1
Fec operon regulator FecR.
 
 
 0.540
ALJ60227.1
Fec operon regulator FecR.
 
 
 0.531
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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