Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALJ59681.1Hypothetical protein. (160 aa)    
Predicted Functional Partners:
sigE_2
ECF RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.888
ALJ58300.1
Hypothetical protein.
  
  
 0.759
ALJ58947.1
Hypothetical protein.
  
     0.757
ALJ60181.1
Hypothetical protein.
  
     0.755
ALJ60157.1
Hypothetical protein.
  
     0.749
ALJ61463.1
Hypothetical protein.
  
     0.748
ALJ59506.1
Hypothetical protein.
  
     0.744
ALJ61686.1
Hypothetical protein.
 
   0.739
ALJ58173.1
Sporulation related domain protein.
  
     0.719
ALJ61234.1
Hypothetical protein.
  
     0.712
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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