STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALJ60061.1SusD family protein. (665 aa)    
Predicted Functional Partners:
ALJ60060.1
TonB dependent receptor.
 
   
 0.940
ALJ60059.1
NHL repeat protein.
 
    0.894
ALJ60063.1
MG2 domain protein.
 
 
   0.859
ALJ60540.1
TonB dependent receptor.
 
 
 
 0.792
ALJ59958.1
TonB dependent receptor.
 
   
 0.786
ALJ59778.1
TonB dependent receptor.
  
 
   0.784
ALJ60422.1
TonB dependent receptor.
 
   
 0.773
ALJ59244.1
TonB-dependent Receptor Plug Domain protein.
 
   
 0.770
ALJ60856.1
TonB dependent receptor.
 
   
 0.761
ALJ60210.1
TonB dependent receptor.
 
 
 
 0.760
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.