Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALJ60309.1Hypothetical protein. (120 aa)    
Predicted Functional Partners:
ALJ60310.1
Site-specific tyrosine recombinase XerC; Belongs to the 'phage' integrase family.
 
     0.951
ALJ60307.1
Hypothetical protein.
 
    0.788
ALJ60308.1
Helix-turn-helix domain protein.
 
    0.787
ALJ60301.1
N-6 DNA Methylase.
 
    0.785
evgS_2
Sensor protein EvgS precursor.
  
     0.773
ALJ60304.1
Hypothetical protein.
  
     0.773
ALJ60302.1
Hypothetical protein.
  
     0.767
hsdS_2-2
Type I restriction modification DNA specificity domain protein.
 
    0.758
ALJ60306.1
Helix-turn-helix domain protein.
  
     0.757
ALJ57381.1
Helix-turn-helix domain protein.
 
    0.739
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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