Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALJ60454.1Fibronectin type III domain protein. (558 aa)    
Predicted Functional Partners:
ALJ60452.1
Hypothetical protein.
       0.773
ALJ60453.1
Hypothetical protein.
       0.773
ALJ60455.1
PEGA domain protein.
       0.689
ALJ60383.1
SusD family protein.
  
     0.581
ALJ58965.1
Outer membrane efflux protein.
  
     0.575
ALJ58368.1
SusD family protein.
  
     0.562
ALJ59808.1
Hypothetical protein.
  
     0.478
ALJ57597.1
Calcineurin-like phosphoesterase.
  
     0.475
ALJ60451.1
Hypothetical protein.
       0.472
ALJ62118.1
Helix-turn-helix domain protein.
  
     0.460
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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