Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALJ60607.1Hypothetical protein. (73 aa)    
Predicted Functional Partners:
ALJ59632.1
Hypothetical protein.
  
     0.771
ALJ61415.1
Tetratricopeptide repeat protein.
  
     0.738
ALJ60176.1
Hypothetical protein.
  
     0.735
bamA_2
Outer membrane protein assembly factor BamA precursor.
 
     0.724
yvqK_2
Cob(I)yrinic acid a,c-diamide adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
       0.690
ALJ58855.1
Hypothetical protein.
  
     0.682
rpsU
30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
 
     0.671
ALJ61145.1
Hypothetical protein.
  
     0.669
cca
Multifunctional CCA protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
     0.660
ALJ61308.1
Hypothetical protein.
  
     0.659
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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