Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALJ60617.1Hypothetical protein. (186 aa)    
Predicted Functional Partners:
ALJ59389.1
Hypothetical protein.
  
 
 0.798
gldN
Hypothetical protein.
 
     0.792
ALJ58947.1
Hypothetical protein.
  
     0.771
ALJ60157.1
Hypothetical protein.
  
     0.770
ALJ61463.1
Hypothetical protein.
  
     0.769
ALJ61385.1
Hypothetical protein.
  
     0.766
ALJ59506.1
Hypothetical protein.
  
     0.765
ALJ60181.1
Hypothetical protein.
  
     0.765
ALJ62666.1
Hypothetical protein.
  
     0.758
ALJ58173.1
Sporulation related domain protein.
  
   
 0.755
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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