STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALJ60621.1Hypothetical protein. (132 aa)    
Predicted Functional Partners:
sigE_3
ECF RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.894
ALJ60619.1
Hypothetical protein.
       0.621
ALJ62246.1
Hypothetical protein.
  
     0.596
ALJ62247.1
Hypothetical protein.
  
     0.555
yfkJ
Low molecular weight protein-tyrosine-phosphatase YfkJ.
       0.552
ALJ60260.1
Hypothetical protein.
  
     0.541
ALJ58360.1
Metallo-beta-lactamase superfamily protein.
  
     0.509
ALJ58449.1
Alginate lyase.
  
     0.496
ALJ61449.1
Hypothetical protein.
  
     0.420
ALJ60063.1
MG2 domain protein.
  
     0.415
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.