exo-4 protein (Bacteroides cellulosilyticus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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experimentally determined

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[Homology]

Score

exo-4

Beta-hexosaminidase. (776 aa)

Predicted Functional Partners:

chiA1_1

0.927

atsA_3

0.902

atsA_4

0.902

lacZ_11

0.738

lacZ_3

0.737

lacZ_26

0.731

lacZ_4

0.704

lacZ_6

0.704

ebgA_5

0.704

agaA_1

0.701

Your Current Organism:

Bacteroides cellulosilyticus

NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
agaA_1	atsA_3	BcellWH2_00729	BcellWH2_01752	Alpha-galactosidase A precursor.	Arylsulfatase precursor.	0.900
agaA_1	atsA_4	BcellWH2_00729	BcellWH2_01846	Alpha-galactosidase A precursor.	Arylsulfatase.	0.901
agaA_1	ebgA_5	BcellWH2_00729	BcellWH2_03347	Alpha-galactosidase A precursor.	Evolved beta-galactosidase subunit alpha; Belongs to the glycosyl hydrolase 2 family.	0.650
agaA_1	exo-4	BcellWH2_00729	BcellWH2_03463	Alpha-galactosidase A precursor.	Beta-hexosaminidase.	0.701
agaA_1	lacZ_11	BcellWH2_00729	BcellWH2_02368	Alpha-galactosidase A precursor.	Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.	0.690
agaA_1	lacZ_26	BcellWH2_00729	BcellWH2_04894	Alpha-galactosidase A precursor.	Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.	0.650
agaA_1	lacZ_3	BcellWH2_00729	BcellWH2_00902	Alpha-galactosidase A precursor.	Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.	0.691
agaA_1	lacZ_4	BcellWH2_00729	BcellWH2_01162	Alpha-galactosidase A precursor.	Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.	0.650
agaA_1	lacZ_6	BcellWH2_00729	BcellWH2_01292	Alpha-galactosidase A precursor.	Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.	0.650
atsA_3	agaA_1	BcellWH2_01752	BcellWH2_00729	Arylsulfatase precursor.	Alpha-galactosidase A precursor.	0.900
atsA_3	atsA_4	BcellWH2_01752	BcellWH2_01846	Arylsulfatase precursor.	Arylsulfatase.	0.923
atsA_3	ebgA_5	BcellWH2_01752	BcellWH2_03347	Arylsulfatase precursor.	Evolved beta-galactosidase subunit alpha; Belongs to the glycosyl hydrolase 2 family.	0.677
atsA_3	exo-4	BcellWH2_01752	BcellWH2_03463	Arylsulfatase precursor.	Beta-hexosaminidase.	0.902
atsA_3	lacZ_11	BcellWH2_01752	BcellWH2_02368	Arylsulfatase precursor.	Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.	0.677
atsA_3	lacZ_26	BcellWH2_01752	BcellWH2_04894	Arylsulfatase precursor.	Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.	0.677
atsA_3	lacZ_3	BcellWH2_01752	BcellWH2_00902	Arylsulfatase precursor.	Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.	0.677
atsA_3	lacZ_4	BcellWH2_01752	BcellWH2_01162	Arylsulfatase precursor.	Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.	0.677
atsA_3	lacZ_6	BcellWH2_01752	BcellWH2_01292	Arylsulfatase precursor.	Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.	0.677
atsA_4	agaA_1	BcellWH2_01846	BcellWH2_00729	Arylsulfatase.	Alpha-galactosidase A precursor.	0.901
atsA_4	atsA_3	BcellWH2_01846	BcellWH2_01752	Arylsulfatase.	Arylsulfatase precursor.	0.923

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