Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
araC_5Arabinose operon regulatory protein. (278 aa)    
Predicted Functional Partners:
btr_6
HTH-type transcriptional activator Btr.
  
     0.756
ALJ57647.1
DNA-binding transcriptional regulator AraC.
  
     0.720
xylR_3
Xylose operon regulatory protein.
 
 
 0.610
mdtE_2
Multidrug resistance protein MdtE precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
 0.606
adaA
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
  
     0.572
bepE_3
Efflux pump membrane transporter BepE; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.528
yesS_3
HTH-type transcriptional regulator YesS.
  
     0.517
yesS_4
HTH-type transcriptional regulator YesS.
  
     0.492
btr_7
HTH-type transcriptional activator Btr.
  
     0.490
oprM_4
Outer membrane protein OprM precursor.
 
     0.451
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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