Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALJ60709.1 | ALJ60710.1 | BcellWH2_03480 | BcellWH2_03481 | Hypothetical protein. | DNA-binding transcriptional regulator AraC. | 0.621 |
ALJ60709.1 | phoR_1 | BcellWH2_03480 | BcellWH2_00048 | Hypothetical protein. | Alkaline phosphatase synthesis sensor protein PhoR. | 0.534 |
ALJ60710.1 | ALJ60709.1 | BcellWH2_03481 | BcellWH2_03480 | DNA-binding transcriptional regulator AraC. | Hypothetical protein. | 0.621 |
ALJ60710.1 | ALJ61509.1 | BcellWH2_03481 | BcellWH2_04292 | DNA-binding transcriptional regulator AraC. | DNA-binding transcriptional activator FeaR. | 0.583 |
ALJ60710.1 | bfmBAB | BcellWH2_03481 | BcellWH2_03587 | DNA-binding transcriptional regulator AraC. | 2-oxoisovalerate dehydrogenase subunit beta. | 0.658 |
ALJ60710.1 | nphR | BcellWH2_03481 | BcellWH2_02006 | DNA-binding transcriptional regulator AraC. | Transcriptional activator NphR. | 0.596 |
ALJ60710.1 | phoR_1 | BcellWH2_03481 | BcellWH2_00048 | DNA-binding transcriptional regulator AraC. | Alkaline phosphatase synthesis sensor protein PhoR. | 0.595 |
ALJ60710.1 | pleC_3 | BcellWH2_03481 | BcellWH2_02394 | DNA-binding transcriptional regulator AraC. | Non-motile and phage-resistance protein. | 0.595 |
ALJ60710.1 | tmoS_25 | BcellWH2_03481 | BcellWH2_04895 | DNA-binding transcriptional regulator AraC. | Sensor histidine kinase TmoS. | 0.586 |
ALJ60710.1 | tmoS_5 | BcellWH2_03481 | BcellWH2_01699 | DNA-binding transcriptional regulator AraC. | Sensor histidine kinase TmoS. | 0.581 |
ALJ60710.1 | todS_14 | BcellWH2_03481 | BcellWH2_02651 | DNA-binding transcriptional regulator AraC. | Sensor histidine kinase TodS. | 0.586 |
ALJ60710.1 | todS_4 | BcellWH2_03481 | BcellWH2_01330 | DNA-binding transcriptional regulator AraC. | Sensor histidine kinase TodS. | 0.664 |
ALJ61509.1 | ALJ60710.1 | BcellWH2_04292 | BcellWH2_03481 | DNA-binding transcriptional activator FeaR. | DNA-binding transcriptional regulator AraC. | 0.583 |
ALJ61509.1 | bfmBAB | BcellWH2_04292 | BcellWH2_03587 | DNA-binding transcriptional activator FeaR. | 2-oxoisovalerate dehydrogenase subunit beta. | 0.581 |
ALJ61509.1 | nphR | BcellWH2_04292 | BcellWH2_02006 | DNA-binding transcriptional activator FeaR. | Transcriptional activator NphR. | 0.697 |
ALJ61509.1 | phoR_1 | BcellWH2_04292 | BcellWH2_00048 | DNA-binding transcriptional activator FeaR. | Alkaline phosphatase synthesis sensor protein PhoR. | 0.793 |
ALJ61509.1 | pleC_3 | BcellWH2_04292 | BcellWH2_02394 | DNA-binding transcriptional activator FeaR. | Non-motile and phage-resistance protein. | 0.903 |
ALJ61509.1 | tmoS_25 | BcellWH2_04292 | BcellWH2_04895 | DNA-binding transcriptional activator FeaR. | Sensor histidine kinase TmoS. | 0.671 |
ALJ61509.1 | tmoS_5 | BcellWH2_04292 | BcellWH2_01699 | DNA-binding transcriptional activator FeaR. | Sensor histidine kinase TmoS. | 0.689 |
ALJ61509.1 | todS_14 | BcellWH2_04292 | BcellWH2_02651 | DNA-binding transcriptional activator FeaR. | Sensor histidine kinase TodS. | 0.694 |
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