Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sigE_4ECF RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily. (171 aa)    
Predicted Functional Partners:
ALJ60846.1
Fec operon regulator FecR.
 
 
 0.777
ALJ61474.1
Fec operon regulator FecR.
 
 
 0.776
ALJ58386.1
Fec operon regulator FecR.
 
 
 0.773
ALJ60227.1
Fec operon regulator FecR.
 
 
 0.772
ALJ59650.1
Fec operon regulator FecR.
 
 
 0.770
ALJ58363.1
Fec operon regulator FecR.
 
 
 0.767
ALJ58935.1
Fec operon regulator FecR.
 
 
 0.762
ALJ62360.1
Fec operon regulator FecR.
 
 
 0.756
ALJ58372.1
Fec operon regulator FecR.
 
 
 0.755
ALJ60531.1
Fec operon regulator FecR.
 
 
 0.755
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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