Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ALJ60713.1SusD family protein. (647 aa)    
Predicted Functional Partners:
fepA_6
Ferrienterobactin receptor precursor.
 
 
   0.935
cirA_4-2
TonB-dependent Receptor Plug Domain protein.
 
 
   0.799
cirA_7
Colicin I receptor precursor.
 
 
   0.783
ALJ61532.1
TonB dependent receptor.
 
    0.734
ALJ62074.1
Heparinase II/III-like protein.
  
     0.732
ALJ59355.1
TonB dependent receptor.
 
 
   0.727
ALJ60260.1
Hypothetical protein.
  
  
 0.725
pfeA_5
Ferric enterobactin receptor precursor.
 
 
   0.709
ALJ60700.1
Starch-binding associating with outer membrane.
  
 
 0.708
ALJ59175.1
TonB dependent receptor.
 
     0.706
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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