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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALJ60713.1SusD family protein. (647 aa)    
Predicted Functional Partners:
fepA_6
Ferrienterobactin receptor precursor.
 
 
   0.936
cirA_4-2
TonB-dependent Receptor Plug Domain protein.
 
 
   0.796
cirA_7
Colicin I receptor precursor.
 
 
   0.780
ALJ61532.1
TonB dependent receptor.
 
    0.735
ALJ62074.1
Heparinase II/III-like protein.
 
     0.733
ALJ60260.1
Hypothetical protein.
  
  
 0.727
ALJ59355.1
TonB dependent receptor.
 
 
   0.724
ALJ60700.1
Starch-binding associating with outer membrane.
  
 
 0.709
ALJ59175.1
TonB dependent receptor.
 
     0.707
pfeA_5
Ferric enterobactin receptor precursor.
 
 
   0.706
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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