Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
exbDBiopolymer transport protein ExbD/TolR. (201 aa)    
Predicted Functional Partners:
ALJ60719.1
Colicin uptake protein TolQ.
 
 
 0.974
ALJ60722.1
Transport protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.962
ALJ60721.1
Biopolymer transport protein ExbD/TolR.
 
    0.950
pstS1
Phosphate-binding protein PstS 1 precursor.
 
  
 0.934
ALJ60724.1
Tetratricopeptide repeat protein.
 
  
 0.927
tolQ
MotA/TolQ/ExbB proton channel family protein.
  
 
 0.586
ALJ58785.1
Biopolymer transport protein ExbB.
  
 
 0.586
ALJ59022.1
Colicin uptake protein TolQ.
  
 
 0.586
ALJ59862.1
Hypothetical protein.
 
 
 0.552
ALJ57703.1
Gram-negative bacterial tonB protein.
 
 
 0.545
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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