Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALJ59925.1 | ALJ60886.1 | BcellWH2_02686 | BcellWH2_03663 | Gram-negative bacterial tonB protein. | Hypothetical protein. | 0.472 |
ALJ59925.1 | btuB_1 | BcellWH2_02686 | BcellWH2_00348 | Gram-negative bacterial tonB protein. | Vitamin B12 transporter BtuB precursor. | 0.550 |
ALJ59925.1 | psaB | BcellWH2_02686 | BcellWH2_01560 | Gram-negative bacterial tonB protein. | Photosystem I P700 chlorophyll a apoprotein A2. | 0.756 |
ALJ59925.1 | tonB_3 | BcellWH2_02686 | BcellWH2_02627 | Gram-negative bacterial tonB protein. | Gram-negative bacterial tonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.444 |
ALJ60886.1 | ALJ59925.1 | BcellWH2_03663 | BcellWH2_02686 | Hypothetical protein. | Gram-negative bacterial tonB protein. | 0.472 |
ALJ60886.1 | btuB_1 | BcellWH2_03663 | BcellWH2_00348 | Hypothetical protein. | Vitamin B12 transporter BtuB precursor. | 0.482 |
ALJ60886.1 | gyrB_1 | BcellWH2_03663 | BcellWH2_02392 | Hypothetical protein. | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.476 |
ALJ60886.1 | gyrB_2 | BcellWH2_03663 | BcellWH2_03012 | Hypothetical protein. | DNA gyrase subunit B. | 0.476 |
ALJ60886.1 | mepM_1 | BcellWH2_03663 | BcellWH2_01763 | Hypothetical protein. | Murein DD-endopeptidase MepM. | 0.414 |
ALJ60886.1 | mltD_1 | BcellWH2_03663 | BcellWH2_03923 | Hypothetical protein. | Membrane-bound lytic murein transglycosylase D precursor. | 0.507 |
ALJ60886.1 | nlpD_2 | BcellWH2_03663 | BcellWH2_04134 | Hypothetical protein. | Murein hydrolase activator NlpD precursor. | 0.414 |
ALJ60886.1 | psaB | BcellWH2_03663 | BcellWH2_01560 | Hypothetical protein. | Photosystem I P700 chlorophyll a apoprotein A2. | 0.481 |
ALJ60886.1 | secE | BcellWH2_03663 | BcellWH2_03404 | Hypothetical protein. | Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.539 |
ALJ60886.1 | tonB_3 | BcellWH2_03663 | BcellWH2_02627 | Hypothetical protein. | Gram-negative bacterial tonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.425 |
btuB_1 | ALJ59925.1 | BcellWH2_00348 | BcellWH2_02686 | Vitamin B12 transporter BtuB precursor. | Gram-negative bacterial tonB protein. | 0.550 |
btuB_1 | ALJ60886.1 | BcellWH2_00348 | BcellWH2_03663 | Vitamin B12 transporter BtuB precursor. | Hypothetical protein. | 0.482 |
btuB_1 | tonB_3 | BcellWH2_00348 | BcellWH2_02627 | Vitamin B12 transporter BtuB precursor. | Gram-negative bacterial tonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.554 |
gyrB_1 | ALJ60886.1 | BcellWH2_02392 | BcellWH2_03663 | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | Hypothetical protein. | 0.476 |
gyrB_2 | ALJ60886.1 | BcellWH2_03012 | BcellWH2_03663 | DNA gyrase subunit B. | Hypothetical protein. | 0.476 |
mepM_1 | ALJ60886.1 | BcellWH2_01763 | BcellWH2_03663 | Murein DD-endopeptidase MepM. | Hypothetical protein. | 0.414 |
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