STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaR_3HTH-type transcriptional activator RhaR. (323 aa)    
Predicted Functional Partners:
rhaS
HTH-type transcriptional activator RhaS.
  
  
 0.768
rhaR_4
HTH-type transcriptional activator RhaR.
  
     0.730
btr_1
HTH-type transcriptional activator Btr.
  
     0.705
btr_6
HTH-type transcriptional activator Btr.
  
     0.689
chbR
HTH-type transcriptional regulator ChbR.
  
     0.680
rhaR_2
HTH-type transcriptional activator RhaR.
  
     0.641
rob
Right origin-binding protein.
 
     0.633
yesS_2
HTH-type transcriptional regulator YesS.
  
     0.610
araC_6
Arabinose operon regulatory protein.
  
     0.605
cdhR
HTH-type transcriptional regulator CdhR.
 
 
 0.589
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.