STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerD_8Tyrosine recombinase XerD; Belongs to the 'phage' integrase family. (405 aa)    
Predicted Functional Partners:
xerD_12
Tyrosine recombinase XerD.
 
 
 
 0.709
ALJ61626.1
Site-specific tyrosine recombinase XerC.
  
     0.659
ALJ61412.1
Hypothetical protein.
       0.599
xerD_11
Tyrosine recombinase XerD.
 
 
 
 0.555
ALJ62118.1
Helix-turn-helix domain protein.
 
   
 0.531
ALJ62300.1
Site-specific tyrosine recombinase XerC; Belongs to the 'phage' integrase family.
  
     0.530
xerD_7
Tyrosine recombinase XerD.
  
     0.473
xerC_3
Tyrosine recombinase XerC.
  
     0.471
ALJ59369.1
Helix-turn-helix domain protein.
 
   
 0.459
ALJ60327.1
Hypothetical protein.
  
     0.454
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.