Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALJ62132.1 | higB | BcellWH2_04923 | BcellWH2_04336 | Helix-turn-helix protein. | Plasmid maintenance system killer protein. | 0.784 |
higB | ALJ62132.1 | BcellWH2_04336 | BcellWH2_04923 | Plasmid maintenance system killer protein. | Helix-turn-helix protein. | 0.784 |
higB | lacZ_23 | BcellWH2_04336 | BcellWH2_04335 | Plasmid maintenance system killer protein. | Beta-galactosidase. | 0.542 |
higB | yddM | BcellWH2_04336 | BcellWH2_04337 | Plasmid maintenance system killer protein. | Putative HTH-type transcriptional regulator YddM. | 0.963 |
lacZ_23 | higB | BcellWH2_04335 | BcellWH2_04336 | Beta-galactosidase. | Plasmid maintenance system killer protein. | 0.542 |
lacZ_23 | yddM | BcellWH2_04335 | BcellWH2_04337 | Beta-galactosidase. | Putative HTH-type transcriptional regulator YddM. | 0.542 |
yddM | higB | BcellWH2_04337 | BcellWH2_04336 | Putative HTH-type transcriptional regulator YddM. | Plasmid maintenance system killer protein. | 0.963 |
yddM | lacZ_23 | BcellWH2_04337 | BcellWH2_04335 | Putative HTH-type transcriptional regulator YddM. | Beta-galactosidase. | 0.542 |